Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs7023696 chr9:123771010 T/C 2.82E-5 503 31.7 31.37 21.97 KM Plot
THCA rs7027797 chr9:123771799 T/C 1.1E-5 501 31.7 31.37 21.97 KM Plot
THCA rs7035522 chr9:16880050 C/T 0.000147 494 31.47 31.7 27.38 KM Plot
THCA rs7047534 chr9:16886487 T/C 0.000145 495 31.47 31.62 27.38 KM Plot
THCA rs7083328 chr10:104769268 G/A 6.98E-14 503 31.15 36.02 32.1 KM Plot
THCA rs7083964 chr10:81781851 G/T 0.000126 503 31.62 32.9 23.2 KM Plot
THCA rs7084472 chr10:104661997 C/T 2.85E-9 502 31.03 35.33 29.58 KM Plot
THCA rs7099987 chr10:104807926 C/T 6.92E-14 503 31.27 35.33 32.1 KM Plot
THCA rs7100592 chr10:104769098 T/G 6.98E-14 503 31.15 36.02 32.1 KM Plot
THCA rs710248 chr1:41574622 C/T 1.6E-7 502 27.1 30.53 31.9 KM Plot
THCA rs71062576 chr1:41566229 T/TTTTC 8.78E-8 493 27.33 30.48 31.83 KM Plot
THCA rs7117184 chr11:88074718 G/A 0 493 31.27 35.6 5.23 KM Plot
THCA rs7117573 chr11:88074997 G/A 0 494 31.28 35.6 5.23 KM Plot
THCA rs71377102 chr2:87005540 A/AT 1.97E-9 491 31.93 28.12 20.78 KM Plot
THCA rs71411868 chr2:87026807 A/G 8.1E-7 491 32.77 27.83 33.7 KM Plot